Stem-loop aly-MIR3436

Accession

MI0014652

Description

Arabidopsis lyrata aly-MIR3436 precursor miRNA

Sequence

6728 reads, 528.0 reads per million, 10 experiments

aaaauuauguuuucaagCGAGCAAAAAUCAUUGUUGAuuuugaaaaagguuuuaagguuaccgguucuguuuguuuguuauccuuuuaagauCAACAACGAUUUUUGGGUCGuuuaaaaguauaauuuu
(((((((((((((.((((((.((((((((.((((((((((((((..(((...((((...((.......))...))))....))))))))))))))))).))))))))..)))))).)))))))))))))

Structure

             c      -G        A              aa   -uuu    guu  cg 
aaaauuauguuuu aagCGA  CAAAAAUC UUGUUGAuuuugaa  agg    uaag   ac  g
||||||||||||| ||||||  |||||||| ||||||||||||||  |||    ||||   ||  u
uuuuaauaugaaa uuuGCU  GUUUUUAG AACAACuagaauuu  ucc    guuu   ug  u
             a      GG        C              --   uauu    guu  uc 

Annotation confidence High

Genome context

GL348713.1: 23816604-23816732 [-]

Mature aly-miR3436-5p

• Accession: MIMAT0017703
• Description: Arabidopsis lyrata aly-miR3436-5p mature miRNA
• Sequence: 18 - CGAGCAAAAAUCAUUGUUGA - 37
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3436-3p

• Accession: MIMAT0017704
• Description: Arabidopsis lyrata aly-miR3436-3p mature miRNA
• Sequence: 93 - CAACAACGAUUUUUGGGUCG - 112
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103