Stem-loop aly-MIR169l

Accession

MI0014556

Description

Arabidopsis lyrata aly-MIR169l precursor miRNA

Sequence

10 reads, 349 reads per million, 1 experiments

guuaagaaauguaugaugaagaugagaggucuaacauggcgaaaagagucauguuuaaUAGCCAAGGAUGACUUGCCUGaucuuuuucaccuccaugauucaauuugaauuucauggguuuuggauuauuaugcaucuaaaagguguaauaauucgaaaaucaaguugaaucuugcggguuagguuucaGGCAGUCUCCUUGGCUAUCuugacauacucuuuucauccauguuauaccuaauuuucuuuuuuuauugaggauauuugaggau
......((((((..((((((((.(((((((.((((((((.(((((((((.(((((..(((((((((((.((((.((((((....(((.((((.((.((((((((((((.((((.........(((((((..(((((((...)))))))))))))))))).)))))))))))).)).)))).)))..)))))))))))))))))))))...))))))))))))))..)))))))).))))....)))..))))))))....))))))......

Structure

guuaag      --au        -u   ----    c        -c         c     -ua           U    U      ucuu   c    c  u            a    auggguuuu       ua       a 
      aaaugu    gaugaaga  gag    aggu uaacaugg  gaaaagagu auguu   aUAGCCAAGGA GACU GCCUGa    uuu accu ca gauucaauuuga uuuc         ggauuau  ugcaucu  
      ||||||    ||||||||  |||    |||| ||||||||  ||||||||| |||||   ||||||||||| |||| ||||||    ||| |||| || |||||||||||| ||||         |||||||  ||||||| a
      uuuaua    uuauuuuu  cuu    ucca auuguacc  cuuuucuca uacag   UAUCGGUUCCU CUGA CGGacu    gga uggg gu cuaaguugaacu aaag         cuuaaua  augugga  
uaggag      ggag        uu   uuaa    u        ua         -     uuC           -    -      --uu   u    c  u            a    ---------       --       a 

Annotation confidence Low

Genome context

GL348717.1: 3149048-3149319 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR169l

Mature aly-miR169l-5p

• Accession: MIMAT0017507
• Description: Arabidopsis lyrata aly-miR169l-5p mature miRNA
• Sequence: 59 - UAGCCAAGGAUGACUUGCCUG - 79
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169l-3p

• Accession: MIMAT0017508
• Description: Arabidopsis lyrata aly-miR169l-3p mature miRNA
• Sequence: 190 - GGCAGUCUCCUUGGCUAUC - 208
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103