Stem-loop aly-MIR168b

Accession

MI0014544

Description

Arabidopsis lyrata aly-MIR168b precursor miRNA

Sequence

253 reads, 8821 reads per million, 1 experiments

agagagaaauacgaugauuuaaaguuaccggcggucucggauUCGCUUGGUGCAGGUCGGGAAcugauuagcugacaauuacacguguguugucaugguugguuugugagauCCCGUCUUGUAUCAACUGAAUcggaguccgaggugaaaaaaauaaggaucuuacuuucagaucu
.(((((..........((((....(((((..(((.(((.((((((.((((((((((.(((((((.((((((((((((((.((....))))))))..)))))))).))....))))).)))))))))).)))))).))).))).)))))...))))..........)))))......

Structure

-----a     aaauacgaug    aaag     gg   u   g      C          U     ----  u        --      u  a 
      gagag          auuu    uuacc  cgg cuc gauUCG UUGGUGCAGG CGGGA    Ac gauuagcu  gacaau ac c
      |||||          ||||    |||||  ||| ||| |||||| |||||||||| |||||    || ||||||||  |||||| ||  
      cuuuc          uaaa    agugg  gcc gag cUAAGU AACUAUGUUC GCCCu    ug uugguugg  cuguug ug g
ucuaga     auucuaggaa    -aaa     -a   u   g      C          U     agag  u        ua      -  u 

Annotation confidence Low

Genome context

GL348720.1: 2067187-2067362 [+]

Mature aly-miR168b-5p

• Accession: MIMAT0017483
• Description: Arabidopsis lyrata aly-miR168b-5p mature miRNA
• Sequence: 43 - UCGCUUGGUGCAGGUCGGGAA - 63
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR168b-3p

• Accession: MIMAT0017484
• Description: Arabidopsis lyrata aly-miR168b-3p mature miRNA
• Sequence: 113 - CCCGUCUUGUAUCAACUGAAU - 133
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103