Stem-loop aly-MIR825

Accession

MI0014604

Description

Arabidopsis lyrata aly-MIR825 precursor miRNA MIR825

Gene
family

RF03826; MIR825

Sequence

1998 reads, 69665 reads per million, 1 experiments

gguauaauucacugauugauuccaucaacucguUCAAGCACCAGCUCGAAGAAGCguagcuaauuuaucuuagaaaaucauggauuugaaaaagcuacgcUUCUCGAGAAGGUGCAUGAACaaguugaugcauauuuugaucugcaaagacc
(((..........((((((...((((((((.(((((.(((((..(((((.(((((((((((..(((((((...........))))..)))..))))))))))))))))..))))).))))).))))))))......)))))).......)))

Structure

   auaauucacu      ---uuc        c     A     AG     A           aa   --    uaga 
ggu          gauuga      caucaacu guUCA GCACC  CUCGA GAAGCguagcu  uuu  aucu    a
|||          ||||||      |||||||| ||||| |||||  ||||| |||||||||||  |||  ||||    a
cca          cuaguu      guaguuga CAAGU CGUGG  GAGCU CUUcgcaucga  aag  uagg    a
   ---gaaacgu      uuauac        a     A     AA     -           aa   uu    uacu 

Annotation confidence Low

Genome context

GL348716.1: 6095652-6095803 [+]

Mature aly-miR825-5p

• Accession: MIMAT0017605
• Description: Arabidopsis lyrata aly-miR825-5p mature miRNA
• Sequence: 34 - UCAAGCACCAGCUCGAAGAAGC - 55
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR825-3p

• Accession: MIMAT0017606
• Description: Arabidopsis lyrata aly-miR825-3p mature miRNA
• Sequence: 101 - UUCUCGAGAAGGUGCAUGAAC - 121
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103