Stem-loop aly-MIR160c

Accession

MI0014523

Description

Arabidopsis lyrata aly-MIR160c precursor miRNA

Literature search

1 open access papers mention aly-MIR160c
(1 sentences)

Sequence

133386 reads, 7482.0 reads per million, 12 experiments

cauauaauaguuugucgucguuaUGCCUGGCUCCCUGUAUGCCAcgaguggauaccgauuuuguuauaaaaucggcugccggugGCGUACAAGGAGCCAAGCAUGAccauaagcauaug
.........((((((.(..(((((((.(((((((.((((((((((..((((...(((((((((...)))))))))))))..)))))))))).))))))).)))))))))))))).....

Structure

cauauaaua      c uc       C       C          ga    aua         u 
         guuugu g  guuaUGC UGGCUCC UGUAUGCCAc  gugg   ccgauuuug  
         |||||| |  ||||||| ||||||| ||||||||||  ||||   ||||||||| u
         cgaaua c  cAGUACG ACCGAGG ACAUGCGgug  cguc   ggcuaaaau  
----guaua      - --       A       A          gc    ---         a 

Annotation confidence High

Genome context

GL348720.1: 677267-677385 [+]

Mature aly-miR160c-5p

• Accession: MIMAT0017439
• Description: Arabidopsis lyrata aly-miR160c-5p mature miRNA
• Sequence: 24 - UGCCUGGCUCCCUGUAUGCCA - 44
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR160c-3p

• Accession: MIMAT0017440
• Description: Arabidopsis lyrata aly-miR160c-3p mature miRNA
• Sequence: 85 - GCGUACAAGGAGCCAAGCAUGA - 106
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103