Stem-loop aly-MIR160c

Accession

MI0014523

Description

Arabidopsis lyrata aly-MIR160c precursor miRNA

Sequence

121 reads, 4219 reads per million, 1 experiments

cauauaauaguuugucgucguuaUGCCUGGCUCCCUGUAUGCCAcgaguggauaccgauuuuguuauaaaaucggcugccggugGCGUACAAGGAGCCAAGCAUGaccauaagcauaug
.........((((((.(..(((((((.(((((((.((((((((((..((((...(((((((((...)))))))))))))..)))))))))).))))))).)))))))))))))).....

Structure

cauauaaua      c uc       C       C          ga    aua         u 
         guuugu g  guuaUGC UGGCUCC UGUAUGCCAc  gugg   ccgauuuug  
         |||||| |  ||||||| ||||||| ||||||||||  ||||   ||||||||| u
         cgaaua c  caGUACG ACCGAGG ACAUGCGgug  cguc   ggcuaaaau  
----guaua      - --       A       A          gc    ---         a 

Annotation confidence Not enough data

Genome context

GL348720.1: 677267-677385 [+]

Mature aly-miR160c-5p

• Accession: MIMAT0017439
• Description: Arabidopsis lyrata aly-miR160c-5p mature miRNA
• Sequence: 24 - UGCCUGGCUCCCUGUAUGCCA - 44
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR160c-3p

• Accession: MIMAT0017440
• Description: Arabidopsis lyrata aly-miR160c-3p mature miRNA
• Sequence: 85 - GCGUACAAGGAGCCAAGCAUG - 105
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103