Stem-loop aly-MIR172e

Accession

MI0014567

Description

Arabidopsis lyrata aly-MIR172e precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

75 reads, 2615 reads per million, 1 experiments

gccaguagucgcagauGCAGCACCAUUAAGAUUCACaagagaugugguucccuuuguuuuugccucucgauccgaagaaaaggguuccuuucgaguggGAAUCUUGAUGAUGCUGCAUcagcaaauacauggc
(((((((...((.(((((((((.(((((((((((.((...((...((..((((((.((((((..........))))))))))))..))..))...)).))))))))))).))))))))).))...))).))))

Structure

    -   guc  a         C           A  aga  ugu  uu      g      ccuc 
gcca gua   gc gauGCAGCA CAUUAAGAUUC Ca   ga   gg  cccuuu uuuuug    u
|||| |||   || ||||||||| ||||||||||| ||   ||   ||  |||||| ||||||     
cggu cau   cg cUACGUCGU GUAGUUCUAAG gu   cu   cc  gggaaa agaagc    c
    a   aaa  a         A           g  gag  -uu  uu      -      cuag 

Annotation confidence Not enough data

Genome context

GL348720.1: 19150533-19150665 [+]

Mature aly-miR172e-5p

• Accession: MIMAT0017529
• Description: Arabidopsis lyrata aly-miR172e-5p mature miRNA
• Sequence: 17 - GCAGCACCAUUAAGAUUCAC - 36
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR172e-3p

• Accession: MIMAT0017530
• Description: Arabidopsis lyrata aly-miR172e-3p mature miRNA
• Sequence: 99 - GAAUCUUGAUGAUGCUGCAU - 118
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103