miRBase entry: ath-MIR4227

Stem-loop ath-MIR4227

Accession

MI0015816

Description

Arabidopsis thaliana ath-MIR4227 precursor miRNA

Sequence

guucacacgacaacacaauuUCACUGGUACCAAUCAUUCCAacaaauuauaacucggucucagggauuguauauuuuguuggauugauugguaacaugaaauuuugaauuuuugaauuuuu
(((((........((.(((((((.((.(((((((((.(((((((((.((((...((((((...)))))))))).))))))))).))))))))).))))))))).))......)))))....

Structure

----     cacgacaa  c       C  G         U         u    acu      c 
    guuca        ca aauuUCA UG UACCAAUCA UCCAacaaa uaua   cggucu  
    |||||        || ||||||| || ||||||||| ||||||||| ||||   |||||| a
    uaagu        gu uuaaagu ac augguuagu agguuguuu auau   guuagg  
uuuu     --uuuuaa  u       -  a         u         u    ---      g

Annotation confidence Not enough data

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Genome context

chr1: 22372670-22372790 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR4227

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ath-miR4227

Accession	MIMAT0017943
Description	Arabidopsis thaliana ath-miR4227 mature miRNA
Sequence	21 - UCACUGGUACCAAUCAUUCCA - 41
Evidence	experimental SOLiD [1]

References

PubMed ID: 20407023
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
"Ma Z, Coruh C, Axtell MJ"
"Plant Cell (2010) 22:1090-1103