Stem-loop aly-MIR837

Accession

MI0014644

Description

Arabidopsis lyrata aly-MIR837 precursor miRNA

Sequence

uauaaagucuccauguuuuuuCAUUGUUUCUUGUUUUUUUCAagauuaugauuuuuguuuaauuacaaucauaaucuugAAACGAACAAGAAACUGAUGAaaaacaugaggacuuuaua
((((((((((.(((((((((.(((((((((((((((.(((((((((((((((...(((......)))))))))))))))))).))))))))))).))))))))))))).))))))))))

Structure

          c         u    -           U               uuu   uu 
uauaaagucu cauguuuuu CAUU GUUUCUUGUUU UUUCAagauuaugau   ugu  a
|||||||||| ||||||||| |||| ||||||||||| |||||||||||||||   |||   
auauuucagg guacaaaaA GUAG CAAAGAACAAG AAAguucuaauacua   aca  a
          a         -    U           C               ---   uu 

Annotation confidence Low

Genome context

GL348713.1: 7996708-7996826 [+]

Mature aly-miR837-5p

• Accession: MIMAT0017687
• Description: Arabidopsis lyrata aly-miR837-5p mature miRNA
• Sequence: 22 - CAUUGUUUCUUGUUUUUUUCA - 42
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR837-3p

• Accession: MIMAT0017688
• Description: Arabidopsis lyrata aly-miR837-3p mature miRNA
• Sequence: 80 - AAACGAACAAGAAACUGAUGA - 100
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103