Stem-loop aly-MIR4232

Accession

MI0015794

Description

Arabidopsis lyrata aly-MIR4232 precursor miRNA

Sequence

uuucauuuuacaaaaauagcuauguauaccugggggucugaaucacuucauucaauaccaagaaaaaggaccgguuaacauaucguuauccaaaccgguugauUCACAUUUAUUAGGAUGUGUGCucgcauugaaaaugagugag
.((((((((.(((....(((.((((((.(((((.(((.((((((((((..(((........)))..)))(((((((...(((....)))...)))))))))))))).)))..))))))))))))))....)))))))))))....

Structure

---u        a   aaau   u      a     -g   c       cuucauucaauaccaagaaaaagg       aac   u 
    uucauuuu caa    agc auguau ccugg  ggu ugaauca                        accgguu   aua c
    |||||||| |||    ||| |||||| |||||  ||| |||||||                        |||||||   |||  
    gaguaaaa guu    uCG UGUGUA GGAUU  UUA ACUuagu                        uggccaa   uau g
gagu        -   acgc   -      -     AU   C       ------------------------       acc   u 

Annotation confidence Not enough data

Genome context

GL348716.1: 23154953-23155097 [+]

Mature aly-miR4232

• Accession: MIMAT0017921
• Description: Arabidopsis lyrata aly-miR4232 mature miRNA
• Sequence: 104 - UCACAUUUAUUAGGAUGUGUGC - 125
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103