miRBase entry: aly-MIR166b

Stem-loop aly-MIR166b


Accession
MI0014533
Description
Arabidopsis lyrata aly-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention aly-MIR166b
(2 sentences)

Sequence

114 reads, 3975 reads per million, 1 experiments
agagggauuuuucuuuugaggGGACUGUUGUCUGGCUCGAGGucucuuauucuaauacaaucucauuucaauagucucagaucugaugauugauuaggguuuuagcaucUCGGACCAGGCUUCAUUCCCCccaauuauuacucccucu
(((((((........(((.(((((.((..((((((.(((((((((...((((((((.((((((((..((..........))..))).)))))))))))))...)).))))))).))))))..)).))))).))).......)))))))

Structure
       uuuuucuu   a     C  UU      C       -  cuu        a     -   uu  aaua 
agaggga        uug ggGGA UG  GUCUGG UCGAGGu cu   auucuaau caauc uca  uc    g
|||||||        ||| ||||| ||  |||||| ||||||| ||   |||||||| ||||| |||  ||     
ucucccu        aac CCCCU AC  CGGACC GGCUcua ga   ugggauua guuag agu  ag    u
       -cauuauu   c     U  UU      A       c  uuu        -     u   cu  acuc 


Annotation confidence Not enough data
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Genome context
GL348717.1: 20552770-20552917 [+]

Database links

Mature aly-miR166b-5p

Accession MIMAT0017461
Description Arabidopsis lyrata aly-miR166b-5p mature miRNA
Sequence 22 - GGACUGUUGUCUGGCUCGAGG - 42
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166b-3p

Accession MIMAT0017462
Description Arabidopsis lyrata aly-miR166b-3p mature miRNA
Sequence 110 - UCGGACCAGGCUUCAUUCCCC - 130
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103