Stem-loop aly-MIR173a

Accession

MI0014568

Description

Arabidopsis lyrata aly-MIR173a precursor miRNA MIR173

Gene
family

RF03457; MIR173

Sequence

191 reads, 6660 reads per million, 1 experiments

ggugacuaaguacuUUCGCUUGCAGAGAGAAAUCACaguggucaaaaguuaaagucucuuuccucuguGAUUCUCUGUGCAAGUGGAAGagcuugcuccc
((.((.(((((.((((((((((((.((((((.((((((.((...((((.........)))))).)))))))))))).)))))))))))).))))).))))

Structure

  u  c     a            G      A      u  uca    uua 
gg ga uaagu cuUUCGCUUGCA AGAGAA UCACag gg   aaag   a
|| || ||||| |||||||||||| |||||| |||||| ||   ||||   a
cc cu guucg GAAGGUGAACGU UCUCUU AGuguc cc   uuuc   g
  -  c     a            G      -      u  ---    ucu 

Annotation confidence High

Genome context

GL348715.1: 10517134-10517233 [+]

Mature aly-miR173a-5p

• Accession: MIMAT0017531
• Description: Arabidopsis lyrata aly-miR173a-5p mature miRNA
• Sequence: 15 - UUCGCUUGCAGAGAGAAAUCAC - 36
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR173a-3p

• Accession: MIMAT0017532
• Description: Arabidopsis lyrata aly-miR173a-3p mature miRNA
• Sequence: 69 - GAUUCUCUGUGCAAGUGGAAG - 89
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103