miRBase entry: aly-MIR166e

Stem-loop aly-MIR166e


Accession
MI0014536
Description
Arabidopsis lyrata aly-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

112 reads, 3905 reads per million, 1 experiments
gaguccauguucuucagugaagcuuuuucuuuugaggGGAAUGUUGUCUGGCACGAGGcccuuaacuuagaucuauauuugauuuuaugucucuucuuuauuuauuagucuauauauacaugaaugaucgauuuuaacgguuaaugacgUCGGACCAGGCUUCAUUCCCCucaauuauaucgcuucuucgaucuuggcuu
(((.(((.(.((......(((((........((((((((((((..((((((..(((.(.(.((((((...........((((((((((((...........................))))))..)))))).......)))))).).).)))..))))))..)))))))))))).......)))))...)).).))))))

Structure
   u   u u  uucagu     uuuuucuu            UU      CA   G c c      uagaucuauau      --      cucuucuuuauu 
gag cca g uc      gaagc        uugaggGGAAUG  GUCUGG  CGA G c uuaacu           uugauu  uuaugu            u
||| ||| | ||      |||||        ||||||||||||  ||||||  ||| | | ||||||           ||||||  ||||||            a
uuc ggu c ag      cuucg        aacuCCCCUUAC  CGGACC  GCU c g aauugg           agcuag  aguaca            u
   -   u u  ---cuu     -cuauauu            UU      AG   g a u      ----caauuuu      ua      uauauaucugau 


Annotation confidence Not enough data
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Genome context
GL348719.1: 21195577-21195776 [+]

Database links

Mature aly-miR166e-5p

Accession MIMAT0017467
Description Arabidopsis lyrata aly-miR166e-5p mature miRNA
Sequence 38 - GGAAUGUUGUCUGGCACGAGG - 58
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166e-3p

Accession MIMAT0017468
Description Arabidopsis lyrata aly-miR166e-3p mature miRNA
Sequence 150 - UCGGACCAGGCUUCAUUCCCC - 170
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103