Stem-loop aly-MIR842

Accession

MI0014615

Description

Arabidopsis lyrata aly-MIR842 precursor miRNA

Sequence

7 reads, 244 reads per million, 1 experiments

auaaacuauugcaaaaagagagaccacaagcgggAUGAUGGAUCCGACCAUGAUGguguugcagaaacuuauguacgagguaguuauccaggggucgaaacaccaUCAUGGUCAGAUCCGUCAUCCcacuuauguuuuuuuaggucaacaaggauau
................((((((((...(((.(((((((((((((.(((((((((((((((...((..(((....((......)).....)))..))..))))))))))))))).))))))))))))).)))..))))))))..(((......)))..

Structure

auaaacuauugcaaaa        cac   c             C               gca  aa   -augu  ga 
                agagagac   aag gggAUGAUGGAUC GACCAUGAUGguguu   ga  cuu     ac  g
                ||||||||   ||| ||||||||||||| |||||||||||||||   ||  |||     ||   
                uuuuuuug   uuc cCCUACUGCCUAG CUGGUACUaccacaa   cu  gga     ug  g
uauaggaacaacugga        -ua   a             A               -ag  gg   ccuau  au 

Annotation confidence Not enough data

Genome context

GL348714.1: 2587536-2587692 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR842

Mature aly-miR842-5p

• Accession: MIMAT0017627
• Description: Arabidopsis lyrata aly-miR842-5p mature miRNA
• Sequence: 35 - AUGAUGGAUCCGACCAUGAUG - 55
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR842-3p

• Accession: MIMAT0017628
• Description: Arabidopsis lyrata aly-miR842-3p mature miRNA
• Sequence: 106 - UCAUGGUCAGAUCCGUCAUCC - 126
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103