Stem-loop aly-MIR169b

Accession

MI0014546

Description

Arabidopsis lyrata aly-MIR169b precursor miRNA

Sequence

4 reads, 139 reads per million, 1 experiments

gugcccaacggaguagaauugcaugaaguggaguagaguauaaugCAGCCAAGGAUGACUUGCCGGaacguuguuaaucauacguauaaauuaugugaugaacauauuucuGGCAAGUUGUCCUUCGGCUACAuuuugcucucuucuucucaugcaaacucucuuugggauau
...(((((.((((.((..((((((((...((((.((((((.((((.((((((((((((((((((((((...((((.(((..(((((.....)))))))).))))...)))))))))))))))))).)))).)))).))))))))))...)))))))).)))))))))))....

Structure

-gug     c    u  aa        agu    u      u    C    -                  cgu    a   au     u 
    cccaa ggag ag  uugcauga   ggag agagua aaug AGCC AAGGAUGACUUGCCGGaa   uguu auc  acgua a
    ||||| |||| ||  ||||||||   |||| |||||| |||| |||| ||||||||||||||||||   |||| |||  ||||| a
    ggguu ucuc uc  aacguacu   cuuc ucucgu uuAC UCGG UUCCUGUUGAACGGucuu   acaa uag  uguau a
uaua     -    -  -a        cuu    -      u    A    C                  uau    g   --     u 

Annotation confidence Low

Genome context

GL348718.1: 10974240-10974412 [+]

Mature aly-miR169b-5p

• Accession: MIMAT0017487
• Description: Arabidopsis lyrata aly-miR169b-5p mature miRNA
• Sequence: 46 - CAGCCAAGGAUGACUUGCCGG - 66
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169b-3p

• Accession: MIMAT0017488
• Description: Arabidopsis lyrata aly-miR169b-3p mature miRNA
• Sequence: 112 - GGCAAGUUGUCCUUCGGCUACA - 133
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103