miRBase entry: aly-MIR165b

Stem-loop aly-MIR165b


Accession
MI0014531
Description
Arabidopsis lyrata aly-MIR165b precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

gugaagaggccauuuccguugugggGAAUGUUGUUUGGAUCGAGGauaucauaaaggcauacacaugcauuuauauguuaugaugcauuauaugauuguguaauguacuuauguacauauauauagaugguaaugguaucgUCGGACCAGGCUUCAUCCCCcucaacauguuaagugccuucaaucac
((((.(((((.((((..((((.((((.(((..((((((.((((.((((((((.......(((.(((..((.((((((((((((((((((((((....)))))))))).))))).))))))).))..)))))))))))))).)))).))))))..))).)))).)))).....)))))))))...))))

Structure
    --a     c    ---cc    u    A   UU      A    G        aaaggca   a   gc  u       -     -          g 
guga   gaggc auuu     guug gggG AUG  GUUUGG UCGA Gauaucau       uac cau  au uauaugu uauga ugcauuauau a
||||   ||||| ||||     |||| |||| |||  |||||| |||| ||||||||       ||| |||  || ||||||| ||||| ||||||||||  
cacu   uuccg ugaa     caac cCCC UAC  CGGACC GGCU cuauggua       aug gua  ua auauaca guauu auguaaugug u
    aac     -    uugua    u    C   UU      A    g        -------   -   ga  u       u     c          u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348718.1: 24606419-24606606 [+]

Database links

Mature aly-miR165b-5p

Accession MIMAT0017457
Description Arabidopsis lyrata aly-miR165b-5p mature miRNA
Sequence 26 - GAAUGUUGUUUGGAUCGAGG - 45
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR165b-3p

Accession MIMAT0017458
Description Arabidopsis lyrata aly-miR165b-3p mature miRNA
Sequence 142 - UCGGACCAGGCUUCAUCCCC - 161
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103