Stem-loop aly-MIR774b

Accession

MI0014650

Description

Arabidopsis lyrata aly-MIR774b precursor miRNA

Sequence

457 reads, 17.0 reads per million, 6 experiments

ggauucacuUGAGAUGAAGAUUUGGAUGACaaauacuuaaaacuuugguaaauuuaaauuaccaauuuaaUUAUCUGUCACCCAAAUCUuccucucagguuuaaucu
(((((.((((((((.((((((((((.(((((.(((.(((((...(((((((.......)))))))))))).))).))))).)))))))))).))))))))..)))))

Structure

     -c        U          A     a   c     acu       au 
ggauu  acuUGAGA GAAGAUUUGG UGACa aua uuaaa   uugguaa  u
|||||  |||||||| |||||||||| ||||| ||| |||||   |||||||  u
ucuaa  uggacucu cuUCUAAACC ACUGU UAU aauuu   aaccauu  a
     uu        c          C     C   U     ---       aa 

Annotation confidence Medium

Genome context

GL348714.1: 3372279-3372385 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aly-MIR774b

Mature aly-miR774b-5p

• Accession: MIMAT0017699
• Description: Arabidopsis lyrata aly-miR774b-5p mature miRNA
• Sequence: 10 - UGAGAUGAAGAUUUGGAUGAC - 30
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR774b-3p

• Accession: MIMAT0017700
• Description: Arabidopsis lyrata aly-miR774b-3p mature miRNA
• Sequence: 71 - UUAUCUGUCACCCAAAUCU - 89
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103