Accession
MI0014520
Description
Arabidopsis lyrata
aly-MIR319c precursor miRNA
Sequence
4
reads,
139
reads per million, 1 experiments
auagauaaauauaugaaucgagauuaaaauagauagauauagaaGGAGAUUCUUUCAGUCCAGUCauggauagaaaaagaagaggguagaaauaucugccgacucauccauccaaacacucgugguagagaaacgaucaauuuuaaaccgcagugacuguaugaaugaugcgggagauauuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCUUcuuuuucuacaauuuuuucauuuuuuucucauuaccuguuuauauau
........((((((((((.((((..(((((.((((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))........)))))))..)))).......))))))))))
........((((((((((.((((..(((((.((((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))........)))))))..)))).......))))))))))
Structure
auagauaa ------c uu a -------- uau A U gaaa a g g ac c c aa c ag acg
auauaugaau gaga aaaau ga uaga agaaGGAG UUCUUUCAGUCCAG Cauggaua aagaag gg uagaaauaucu ccg ucau cau ca cacu guggu agaa a
|||||||||| |||| ||||| || |||| |||||||| |||||||||||||| |||||||| |||||| || ||||||||||| ||| |||| ||| || |||| ||||| ||||
uauauauuug cucu uuuua cu aucu ucUUCCUC AGGGAAGUCAGGUU gugucuau uucuuc cu guuuuuauaga ggc agua gua gu guga cgcca uuuu u
-------- uccauua uu - uuuuuaac uuu G u ---- - a g gu a u ca - aa aac
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348716.1: 19899133-19899403 [+]
Database links
Mature aly-miR319c-5p
| Accession | MIMAT0017433 |
| Description | Arabidopsis lyrata aly-miR319c-5p mature miRNA |
| Sequence | 45 - GGAGAUUCUUUCAGUCCAGUC - 65 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR319c-3p
| Accession | MIMAT0017434 |
| Description | Arabidopsis lyrata aly-miR319c-3p mature miRNA |
| Sequence | 204 - UUGGACUGAAGGGAGCUCCUU - 224 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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