Stem-loop aly-MIR319c

Accession

MI0014520

Description

Arabidopsis lyrata aly-MIR319c precursor miRNA

Literature search

1 open access papers mention aly-MIR319c
(1 sentences)

Sequence

684488 reads, 9780.0 reads per million, 12 experiments

auagauaaauauaugaaucgagauuaaaauagauagauauagaaggagauucuuucaguccagucauggauagaaaaagaagaggguagaaauAUCUGCCGACUCAUCCAUCCAaacacucgugguagagaaacgaucaauuuuaaaccgcagugacuguaugaaugaugcgggagauauuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCuucuuuuucuacaauuuuuucauuuuuuucucauuaccuguuuauauau
........((((((((((.((((..(((((.((((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))........)))))))..)))).......))))))))))

Structure

auagauaa          ------c    uu     a  --------    uau        a              u        gaaa      a  g           G   AC    C   C  aa    c     ag    acg 
        auauaugaau       gaga  aaaau ga        uaga   agaaggag uucuuucaguccag cauggaua    aagaag gg uagaaauAUCU CCG  UCAU CAU CA  cacu guggu  agaa   a
        ||||||||||       ||||  ||||| ||        ||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||    
        uauauauuug       cucu  uuuua cu        aucu   ucuuCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuuauaga ggc  agua gua gu  guga cgcca  uuuu   u
--------          uccauua    uu     -  uuuuuaac    uuu        G              u        ----      -  a           g   gu    a   u  ca    -     aa    aac 

Annotation confidence Low

Genome context

GL348716.1: 19899133-19899403 [+]

Mature aly-miR319c-5p

• Accession: MIMAT0017433
• Description: Arabidopsis lyrata aly-miR319c-5p mature miRNA
• Sequence: 94 - AUCUGCCGACUCAUCCAUCCA - 114
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR319c-3p

• Accession: MIMAT0017434
• Description: Arabidopsis lyrata aly-miR319c-3p mature miRNA
• Sequence: 204 - UUGGACUGAAGGGAGCUCC - 222
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103