Stem-loop aly-MIR822

Accession

MI0014601

Description

Arabidopsis lyrata aly-MIR822 precursor miRNA

Sequence

17 reads, 593 reads per million, 1 experiments

auggggAUGUAACGCAUGUUGUUUUCUgcgaggagcauuuguacauguuucauguagcaugaaaucacauuccauacaugaauaguaauuaccuuagauaggacauuguacugcuugaaaaaacuuguuaacgucauaaaauuuaugaugaaaacaccuauaaaaaguguuuuuucaagcauguguccaugagaguaauuuuuauucauauaugacaugugauuucauccuucauaaaaugugugcaaaugcuuuccacagGAAACAACAUACGUUACAUCCcaucua
...(((((((((((.(((((((((((((.(.(((((((((((((((((((.(((.((.((((((((((((..((((.((((((((.((((((((((....((((((.....(((((((((((((.((((..((((((((...))))))))..))))............))))))))))))).)))))).)))).)))))).)))))))).))))..)))))))))))).)).))).))))))))))))))))))).).))))))))))))).))))))))))).....

Structure

--aug           C             c a                   c   u  c            uc    c        u      -    gaua      uguac             -----------u    aa        a 
     gggAUGUAACG AUGUUGUUUUCUg g ggagcauuuguacauguuu aug ag augaaaucacau  caua augaauag aauuac cuua    ggacau     ugcuugaaaaaac            uguu  cgucauaa  
     ||||||||||| ||||||||||||| | ||||||||||||||||||| ||| || ||||||||||||  |||| |||||||| |||||| ||||    ||||||     |||||||||||||            ||||  |||||||| a
     cCCUACAUUGC UACAACAAAGgac c uuucguaaacguguguaaa uac uc uacuuuagugua  guau uacuuauu uuaaug gagu    ccugug     acgaacuuuuuug            acaa  guaguauu  
aucua           A             a c                   a   u  c            ca    a        u      a    ---a      ----u             ugaaaaauaucc    aa        u 

Annotation confidence Low

Genome context

GL348718.1: 1060462-1060749 [-]

Mature aly-miR822-5p

• Accession: MIMAT0017599
• Description: Arabidopsis lyrata aly-miR822-5p mature miRNA
• Sequence: 7 - AUGUAACGCAUGUUGUUUUCU - 27
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR822-3p

• Accession: MIMAT0017600
• Description: Arabidopsis lyrata aly-miR822-3p mature miRNA
• Sequence: 262 - GAAACAACAUACGUUACAUCC - 282
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103