miRBase entry: aly-MIR4238

Stem-loop aly-MIR4238


Accession
MI0015800
Description
Arabidopsis lyrata aly-MIR4238 precursor miRNA


Sequence

uuucaagagugauuugguuugggguuuuaauuugcaaaaauuugaagucaaugugugcuauucgcauaaagacuucaauuUUUUUGCAAAUUAAAACCCCAAaccaguaauuccuaaucaug
......((((...(((((((((((((((((((((((((((.((((((((..((((((.....))))))..))))))))..)))))))))))))))))))))))))))..)))).........

Structure
---uuucaa    gau                           -u        aa      c 
         gagu   uugguuugggguuuuaauuugcaaaaa  uugaaguc  ugugug u
         ||||   |||||||||||||||||||||||||||  ||||||||  |||||| a
         cuua   gaccaAACCCCAAAAUUAAACGUUUUU  aacuucag  auacgc u
guacuaauc    -au                           uu        aa      u 


Annotation confidence Not enough data
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Genome context
GL348719.1: 4417749-4417870 [+]

Database links

Mature aly-miR4238

Accession MIMAT0017927
Description Arabidopsis lyrata aly-miR4238 mature miRNA
Sequence 81 - UUUUUGCAAAUUAAAACCCCAA - 102
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103