Stem-loop aly-MIR4238

Accession

MI0015800

Description

Arabidopsis lyrata aly-MIR4238 precursor miRNA

Sequence

98 reads, 13.0 reads per million, 4 experiments

uuucaagagugauuuGGUUUGGGGUUUUAAUUUGCAAAaauuugaagucaaugugugcuauucgcauaaagacuucaauuuuUUUGCAAAUUAAAACCCCAAACCaguaauuccuaaucaug
......((((...(((((((((((((((((((((((((((.((((((((..((((((.....))))))..))))))))..)))))))))))))))))))))))))))..)))).........

Structure

---uuucaa    gau                           -u        aa      c 
         gagu   uuGGUUUGGGGUUUUAAUUUGCAAAaa  uugaaguc  ugugug u
         ||||   |||||||||||||||||||||||||||  ||||||||  |||||| a
         cuua   gaCCAAACCCCAAAAUUAAACGUUUuu  aacuucag  auacgc u
guacuaauc    -au                           uu        aa      u 

Annotation confidence Medium

Genome context

GL348719.1: 4417749-4417870 [+]

Mature aly-miR4238-5p

• Accession: MIMAT0057403
• Description: Arabidopsis lyrata aly-miR4238-5p mature miRNA
• Sequence: 16 - GGUUUGGGGUUUUAAUUUGCAAA - 38
• Evidence: experimental ; unknown

Mature aly-miR4238-3p

• Accession: MIMAT0017927
• Description: Arabidopsis lyrata aly-miR4238-3p mature miRNA
• Sequence: 83 - UUUGCAAAUUAAAACCCCAAACC - 105
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103