Stem-loop aly-MIR166a

Accession

MI0014532

Description

Arabidopsis lyrata aly-MIR166a precursor miRNA

Sequence

114 reads, 3975 reads per million, 1 experiments

gggguuuucucuuuugaggGGAAUGUUGUCUGGCUCGAGGacucuggcucgcucuauucauguuggaucuuuuucgaucuaauaaucgaauugaaccuccagauuucagaucugacuaggguuuuagcgucgUCGGACCAGGCUUCAUUCCCCccaauuguugcucc
(((((.....(..(((.((((((((..((((((.((((.(((.((((...(((((((((.(((((((((......)))))))))...))).........((((((...))))))..)))))).)))).))).)))).))))))..)))))))).)))..)..)))))

Structure

     uuucu uu   a        UU      C    G   u    cuc      --------------------------   --a         uu 
ggggu     c  uug ggGGAAUG  GUCUGG UCGA Gac cugg   gcucua                          uuc   uguuggauc  u
|||||     |  ||| ||||||||  |||||| |||| ||| ||||   ||||||                          |||   |||||||||   
ccucg     g  aac CCCCUUAC  CGGACC GGCU cug gauu   ugggau                          aag   auaaucuag  u
     ---uu uu   c        UU      A    g   c    --u      cagucuagacuuuagaccuccaaguu   cua         cu 

Annotation confidence Not enough data

Genome context

GL348716.1: 22684209-22684375 [+]

Mature aly-miR166a-5p

• Accession: MIMAT0017459
• Description: Arabidopsis lyrata aly-miR166a-5p mature miRNA
• Sequence: 20 - GGAAUGUUGUCUGGCUCGAGG - 40
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR166a-3p

• Accession: MIMAT0017460
• Description: Arabidopsis lyrata aly-miR166a-3p mature miRNA
• Sequence: 133 - UCGGACCAGGCUUCAUUCCCC - 153
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103