miRBase entry: aly-MIR166a

Stem-loop aly-MIR166a


Accession
MI0014532
Description
Arabidopsis lyrata aly-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

114 reads, 3975 reads per million, 1 experiments
gggguuuucucuuuugaggGGAAUGUUGUCUGGCUCGAGGacucuggcucgcucuauucauguuggaucuuuuucgaucuaauaaucgaauugaaccuccagauuucagaucugacuaggguuuuagcgucgUCGGACCAGGCUUCAUUCCCCccaauuguugcucc
(((((.....(..(((.((((((((..((((((.((((.(((.((((...(((((((((.(((((((((......)))))))))...))).........((((((...))))))..)))))).)))).))).)))).))))))..)))))))).)))..)..)))))

Structure
     uuucu uu   a        UU      C    G   u    cuc      --------------------------   --a         uu 
ggggu     c  uug ggGGAAUG  GUCUGG UCGA Gac cugg   gcucua                          uuc   uguuggauc  u
|||||     |  ||| ||||||||  |||||| |||| ||| ||||   ||||||                          |||   |||||||||   
ccucg     g  aac CCCCUUAC  CGGACC GGCU cug gauu   ugggau                          aag   auaaucuag  u
     ---uu uu   c        UU      A    g   c    --u      cagucuagacuuuagaccuccaaguu   cua         cu 


Annotation confidence Not enough data
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Genome context
GL348716.1: 22684209-22684375 [+]

Database links

Mature aly-miR166a-5p

Accession MIMAT0017459
Description Arabidopsis lyrata aly-miR166a-5p mature miRNA
Sequence 20 - GGAAUGUUGUCUGGCUCGAGG - 40
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166a-3p

Accession MIMAT0017460
Description Arabidopsis lyrata aly-miR166a-3p mature miRNA
Sequence 133 - UCGGACCAGGCUUCAUUCCCC - 153
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103