Stem-loop aly-MIR395h

Accession

MI0014635

Description

Arabidopsis lyrata aly-MIR395h precursor miRNA

Sequence

gucaacuguccccuugaGUUCCCUUAAACGCUUCAUUGuucauacuuugugaguuuguguucuaagaucuaucgaccgauaaaucaaucugaugaacaCUGAAGUGUUUGGGGGGACUCuaggugacaucuuggc
(((((.((((.(((.((((((((((((((((((((.(((((((.(....(((..(((.(((............))))))....)))....)))))))).)))))))))))))))))))).))).))))..)))))

Structure

     -c    c   u                    U       a uuug   --gu   u   cuaag 
gucaa  uguc ccu gaGUUCCCUUAAACGCUUCA UGuucau c    uga    uug guu     a
|||||  |||| ||| |||||||||||||||||||| ||||||| |    |||    ||| |||      
cgguu  acag gga CUCAGGGGGGUUUGUGAAGU acaagua g    acu    agc cag     u
     cu    u   u                    C       - ucua   aaau   -   cuauc 

Annotation confidence Low

Genome context

GL348714.1: 14006209-14006343 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from aly-MIR395h

Mature aly-miR395h-5p

• Accession: MIMAT0017667
• Description: Arabidopsis lyrata aly-miR395h-5p mature miRNA
• Sequence: 18 - GUUCCCUUAAACGCUUCAUUG - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR395h-3p

• Accession: MIMAT0017668
• Description: Arabidopsis lyrata aly-miR395h-3p mature miRNA
• Sequence: 99 - CUGAAGUGUUUGGGGGGACUC - 119
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103