Stem-loop aly-MIR394b

Accession

MI0014575

Description

Arabidopsis lyrata aly-MIR394b precursor miRNA

Sequence

83786 reads, 1937.0 reads per million, 11 experiments

gaucaugcggguuugacaaaagagucucuuacagagaucuUUGGCAUUCUGUCCACCUCCucucucuauauguauauguaugagcgcugucuugugaggggagguggacauauugccaacagAGAUCUGUUAGGGUUUCUUuguaaaaccccucaugauu
(((((((.((((((.(((((.(((.((((.(((((..(((((((((...((((((((((((((((((((((....))))).)))(((......)))))))))))))))))...)))))).)))..))))).)))).)))))))).))))))..)))))))

Structure

       -c      g     a   u    u     ga   -      UUC              ------------   -     g 
gaucaug  ggguuu acaaa gag cucu acaga  ucu UUGGCA   UGUCCACCUCCucu            cuc uauau u
|||||||  |||||| ||||| ||| |||| |||||  ||| ||||||   ||||||||||||||            ||| |||||  
uuaguac  cccaaa uguUU CUU GGGA UGUCU  Aga aaccgu   acagguggagggga            gag augua a
       uc      a     -   U    U     AG   c      uau              guguucugucgc   u     u 

Annotation confidence Low

Genome context

GL348714.1: 17011842-17012001 [+]

Mature aly-miR394b-5p

• Accession: MIMAT0017545
• Description: Arabidopsis lyrata aly-miR394b-5p mature miRNA
• Sequence: 41 - UUGGCAUUCUGUCCACCUCC - 60
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR394b-3p

• Accession: MIMAT0017546
• Description: Arabidopsis lyrata aly-miR394b-3p mature miRNA
• Sequence: 123 - AGAUCUGUUAGGGUUUCUU - 141

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103