Stem-loop aly-MIR4240

Accession

MI0015802

Description

Arabidopsis lyrata aly-MIR4240 precursor miRNA

Sequence

uuuucguagccgugaaguuaAUGGCUAGAGUGACUAGACCCGuaacauugcuaugaaaucauuugaacugaaauuuguugaucugcgguuuauuuucaagagaucaaaacgaagauaagugguggcacaaguuuacuuuagcgaauuuaucgcuauguuaucgggucuagcacucuauccacugauuucacgaccacgagccuc
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.(((((.((..(((((...((((((((.(..((((.((((((((((.............)))))))))).)))))))))))))..))))).)).))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....

Structure

--uu     a c          A   C       A         -      u  u     a  au     cug        u au    g          aagag 
    uucgu g cgugaaguua UGG UAGAGUG CUAGACCCG uaacau gc augaa uc  uugaa   aaauuugu g  cugc guuuauuuuc     a
    ||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||| ||  |||||   |||||||| |  |||| ||||||||||     u
    gagca c gcacuuuagu acc aucucac gaucugggc auugua cg uauuu ag  gauuu   uuugaaca c  ggug ugaauagaag     c
cucc     c a          c   u       -         u      u  c     a  -c     -ca        - --    g          caaaa 

Annotation confidence Not enough data

Genome context

GL348719.1: 10082347-10082550 [+]

Mature aly-miR4240

• Accession: MIMAT0017929
• Description: Arabidopsis lyrata aly-miR4240 mature miRNA
• Sequence: 21 - AUGGCUAGAGUGACUAGACCCG - 42
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103