Accession
MI0015802
Description
Arabidopsis lyrata
aly-MIR4240 precursor miRNA
Sequence
614
reads,
71.0
reads per million, 6 experiments
uuuucguagccgugaaguuaAUGGCUAGAGUGACUAGACCCGuaacauugcuaugaaaucauuugaacugaaauuuguugaucugcgguuuauuuucaagagaucaaaacgaagauaagugguggcacaaguuuacuuuagcgaauuuaucgcuAUGUUAUCGGGUCUAGCACUcuauccacugauuucacgaccacgagccuc
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.(((((.((..(((((...((((((((.(..((((.((((((((((.............)))))))))).)))))))))))))..))))).)).))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.(((((.((..(((((...((((((((.(..((((.((((((((((.............)))))))))).)))))))))))))..))))).)).))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....
Structure
--uu a c A C A - u u a au cug u au g aagag
uucgu g cgugaaguua UGG UAGAGUG CUAGACCCG uaacau gc augaa uc uugaa aaauuugu g cugc guuuauuuuc a
||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||| || ||||| |||||||| | |||| |||||||||| u
gagca c gcacuuuagu acc aucUCAC GAUCUGGGC AUUGUA cg uauuu ag gauuu uuugaaca c ggug ugaauagaag c
cucc c a c u - U u c a -c -ca - -- g caaaa
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
GL348719.1: 10082347-10082550 [+]
Database links
Mature aly-miR4240-5p
| Accession | MIMAT0017929 |
| Description | Arabidopsis lyrata aly-miR4240-5p mature miRNA |
| Sequence | 21 - AUGGCUAGAGUGACUAGACCCG - 42 |
| Evidence |
experimental
SOLiD [1] |
Mature aly-miR4240-3p
| Accession | MIMAT0057404 |
| Description | Arabidopsis lyrata aly-miR4240-3p mature miRNA |
| Sequence | 155 - AUGUUAUCGGGUCUAGCACU - 174 |
| Evidence |
experimental
unknown |
References
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