Accession
MI0015804
Description
Arabidopsis lyrata
aly-MIR4242 precursor miRNA
Sequence
330
reads,
40.0
reads per million, 10 experiments
cccaaauccucagaacuugggAAUGCUAUUGUUAACUUUUCUCaagcagugucugaugggcugcugauauuuuucucuuccuauuacccuguggaauguugcauugcauuuggaaagauguguguuacagaaacucuagaAAAGUUAACUAUGGCAUUCCCuaguucuuggaauuggaagc
.((((.(((..((((((.(((((((((((.((((((((((((..((((((.(.....).))))))((......))..((((...........))))(((.((((.((((((....)))))))))).)))........)))))))))))).))))))))))).)))))).))).))))....
.((((.(((..((((((.(((((((((((.((((((((((((..((((((.(.....).))))))((......))..((((...........))))(((.((((.((((((....)))))))))).)))........)))))))))))).))))))))))).)))))).))).))))....
Structure
---c a uc u U Caagcagugucugaugggcugcugauauuuuucucuuccuauuacccuguggaa u u g
ccaa ucc agaacu gggAAUGCUAU GUUAACUUUUCU ugu gcau gcauuu g
|||| ||| |||||| ||||||||||| |||||||||||| ||| |||| ||||||
gguu agg ucuuga CCCUUACGGUA CAAUUGAAAaga aca ugug uguaga a
cgaa a -u u U ----------------------------------------------ucucaaag u - a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
GL348719.1: 19830812-19830992 [+]
Database links
Mature aly-miR4242-5p
| Accession | MIMAT0057406 |
| Description | Arabidopsis lyrata aly-miR4242-5p mature miRNA |
| Sequence | 22 - AAUGCUAUUGUUAACUUUUCUC - 43 |
| Evidence |
experimental
unknown |
Mature aly-miR4242-3p
| Accession | MIMAT0017931 |
| Description | Arabidopsis lyrata aly-miR4242-3p mature miRNA |
| Sequence | 141 - AAAGUUAACUAUGGCAUUCCC - 161 |
| Evidence |
experimental
SOLiD [1] |
References
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