Stem-loop aly-MIR169f

Accession

MI0014550

Description

Arabidopsis lyrata aly-MIR169f precursor miRNA

Sequence

13 reads, 453 reads per million, 1 experiments

uguaucagagggucuugcaugaaggaauaaagaauggaauUGAGCCAAGGAUGACUUGCCGguuuaaacacaaccggauuaugaccauugauuuggucucauucacaaucuguugauucgugucugGCAAGUUGACCUUGGCUCUGCuucguucucuauucuuccauguuagauuccagauaua
((((((.(.((((((.(((((.(((((((.((((((((...(((((((((..((((((((((........((((.(((((..(((((......)))))........)))))))))........))))))))))..)))))))))...)))))))).))))))).))))).))))))).))))))

Structure

      a a      u     a       a        auU         AU          uuuaaaca    c     ------au     uu 
uguauc g gggucu gcaug aggaaua agaaugga   GAGCCAAGG  GACUUGCCGg        caac ggauu        gacca  g
|||||| | |||||| ||||| ||||||| ||||||||   |||||||||  ||||||||||        |||| |||||        |||||   
auauag c cuuaga uguac uucuuau ucuugcuu   CUCGGUUCC  UUGAACGguc        guug ucuaa        cuggu  a
      a -      u     c       c        CGU         AG          ugugcuua    -     cacuuacu     uu 

Annotation confidence Low

Genome context

GL348715.1: 6024138-6024321 [-]

Mature aly-miR169f-5p

• Accession: MIMAT0017495
• Description: Arabidopsis lyrata aly-miR169f-5p mature miRNA
• Sequence: 41 - UGAGCCAAGGAUGACUUGCCG - 61
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169f-3p

• Accession: MIMAT0017496
• Description: Arabidopsis lyrata aly-miR169f-3p mature miRNA
• Sequence: 127 - GCAAGUUGACCUUGGCUCUGC - 147
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103