Stem-loop ath-MIR4240

Accession

MI0015820

Description

Arabidopsis thaliana ath-MIR4240 precursor miRNA

Sequence

cuuucguagccaugaaguuaauggcuagagUGACUAGACCCGUAACAUUACcauauaucauuugaacugaaauuuguuuguucugaggauuauuuuucaagauaucaaaacgaagauaaguggcugcacaaacuuuuuuuagcgaauauaucguuauguuaucgggucuagcacucuauccacugauuucaugaccacgagccuc
..(((((.(.((((((((((.(((.(((((((.(((((((((((((((.((.((((((...(((..((((((...((((((((((((((....))))).)))((((........)))).........))))))...))))))))))))))).)).)))))).)))))))))))))))).))).)))))))))).).)))))....

Structure

--cu     a c          a   c       A         -      U  c      cau   aa      uuu      -------------------------   -     u 
    uucgu g caugaaguua ugg uagagUG CUAGACCCG UAACAU AC auauau   uug  cugaaa   guuugu                         ucu gagga u
    ||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||||   |||  ||||||   ||||||                         ||| |||||  
    gagca c guacuuuagu acc aucucac gaucugggc auugua ug uauaua   agc  gauuuu   caaaca                         aga cuuuu a
cucc     c a          c   u       -         u      u  c      ---   --      uuu      cgucggugaauagaagcaaaacuau   a     u 

Annotation confidence Not enough data

Genome context

chr4: 10711558-10711762 [-]

Mature ath-miR4240

• Accession: MIMAT0017948
• Description: Arabidopsis thaliana ath-miR4240 mature miRNA
• Sequence: 31 - UGACUAGACCCGUAACAUUAC - 51
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103


2. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620