Accession
MI0014553
Description
Arabidopsis lyrata
aly-MIR169i precursor miRNA
Sequence
9
reads,
314
reads per million, 1 experiments
gaaggagaugucaaagaugaguaggagaaucauauuuggUAGCCAAGGAUGACUUGCCUGauuccuuugcguaaaaugguuagugucauguuugacaaagugacuaucaauuacaucaagcgaugaccauuuugcuuauaaaaaagaugucaGGCAGUCUCCUUGGAUAUCcuuauauguucuucucuuucaucucagacauucaucuuc
(((((.((((((..(((((((.(((((((.(((((..((...(((((((.((((.(((((((..((((..(((((((((((...(((..((((((.....(((...)))......)))))))))))))))))))).......))))..))))))))))))))))))....))..))))))))))))..)))))))..)))).)).)))))
(((((.((((((..(((((((.(((((((.(((((..((...(((((((.((((.(((((((..((((..(((((((((((...(((..((((((.....(((...)))......)))))))))))))))))))).......))))..))))))))))))))))))....))..))))))))))))..)))))))..)))).)).)))))
Structure
a - aa -u u uu -UAG U U uc -----gc agu au -caaag c
gaagg ga uguc agaugag aggagaa cauau gg CCAAGGA GACU GCCUGau cuuu guaaaaugguu guc guuuga uga
||||| || |||| ||||||| ||||||| ||||| || ||||||| |||| ||||||| |||| ||||||||||| ||| |||||| ||| u
cuucu cu acag ucuacuu ucuucuu guaua cC GGUUCCU CUGA CGGacug gaaa cguuuuaccag uag cgaacu acu
a u ac uc - uu UAUA - - ua aaauauu --- -- acauua a
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348717.1: 3130574-3130783 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR169i
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR169i-5p
| Accession | MIMAT0017501 |
| Description | Arabidopsis lyrata aly-miR169i-5p mature miRNA |
| Sequence | 40 - UAGCCAAGGAUGACUUGCCUG - 60 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR169i-3p
| Accession | MIMAT0017502 |
| Description | Arabidopsis lyrata aly-miR169i-3p mature miRNA |
| Sequence | 153 - GGCAGUCUCCUUGGAUAUC - 171 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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