Stem-loop aly-MIR160a

Accession

MI0014521

Description

Arabidopsis lyrata aly-MIR160a precursor miRNA

Sequence

126 reads, 4393 reads per million, 1 experiments

cgccuauacauguauauagauguauauguauuauauauguaUGCCUGGCUCCCUGUAUGCCAuaugcugagcucaucgaguaucgaugaccuccguggaugGCGUAUGAGGAGCCAUGCAUAuccucauacauauauauacauaauuaugugauggug
((((..((((((.......((((((((((((.......((((((.(((((((.((((((((((..((.(((.(((((((...))))))).))).))..)))))))))).))))))).))))))....)))))))))))).......))))))..))))

Structure

    ua      uauauag            uauauau      C       C          au  u   c       g 
cgcc  uacaug       auguauauguau       guaUGC UGGCUCC UGUAUGCCAu  gc gag ucaucga  
||||  ||||||       ||||||||||||       |||||| ||||||| ||||||||||  || ||| ||||||| u
gugg  guguau       uauauauacaua       uAUACG ACCGAGG GUAUGCGgua  ug cuc aguagcu  
    ua      uaauaca            ---cucc      U       A          gg  c   c       a 

Annotation confidence Low

Genome context

GL348716.1: 18997241-18997398 [+]

Mature aly-miR160a-5p

• Accession: MIMAT0017435
• Description: Arabidopsis lyrata aly-miR160a-5p mature miRNA
• Sequence: 42 - UGCCUGGCUCCCUGUAUGCCA - 62
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR160a-3p

• Accession: MIMAT0017436
• Description: Arabidopsis lyrata aly-miR160a-3p mature miRNA
• Sequence: 102 - GCGUAUGAGGAGCCAUGCAUA - 122
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103