Stem-loop aly-MIR4229

Accession

MI0015790

Description

Arabidopsis lyrata aly-MIR4229 precursor miRNA

Sequence

acauaaaucguccuaaaaccUUGGCAGGGAGGUCCUCCACACacaauauuuacaaggacguuuugcacguugcauucuuugaaauugaugugaauauuguguguggagacaucuuugucaagguguuagaugauuuauauuaa
..((((((((((.(((.(((((((((((((.(((.(((((((((((((((((((..(((((.....))))).................)))))))))))))))))))))).))))))))))))).))))))))))))).....

Structure

---ac          c   a             G   C                   ---------------ag     u 
     auaaaucguc uaa accUUGGCAGGGA GUC UCCACACacaauauuuaca                 gacgu u
     |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||                 ||||| u
     uauuuaguag auu uggaacuguuucu cag agguguguguuauaagugu                 uugca g
aauua          -   g             a   -                   aguuaaaguuucuuacg     c 

Annotation confidence Not enough data

Genome context

GL348715.1: 6816117-6816259 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR4229

Mature aly-miR4229

• Accession: MIMAT0017917
• Description: Arabidopsis lyrata aly-miR4229 mature miRNA
• Sequence: 21 - UUGGCAGGGAGGUCCUCCACAC - 42
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103