Stem-loop aly-MIR4230

Accession

MI0015791

Description

Arabidopsis lyrata aly-MIR4230 precursor miRNA

Sequence

aauuauuauuauaccucucaUGUCUCGGAAAUUUGCACCCUgugauuaauauauuggaaucauuuuuauugcucacagggugcaaacuuuagagacuugaaauguguaauaauaaaaua
..((((((((((((...(((.(((((.(((.((((((((((((((.(((((...((....))....))))).)))))))))))))).))).))))).)))...))))))))))))....

Structure

--aa            cuc   U     G   A              u     -uau  g 
    uuauuauuauac   uca GUCUC GAA UUUGCACCCUguga uaaua    ug a
    ||||||||||||   ||| ||||| ||| |||||||||||||| |||||    ||  
    aauaauaaugug   agu cagag uuu aaacgugggacacu guuau    ac a
auaa            uaa   u     a   c              c     uuuu  u 

Annotation confidence Not enough data

Genome context

GL348715.1: 6818689-6818807 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR4230

Mature aly-miR4230

• Accession: MIMAT0017918
• Description: Arabidopsis lyrata aly-miR4230 mature miRNA
• Sequence: 21 - UGUCUCGGAAAUUUGCACCCU - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103