Stem-loop aly-MIR4241

Accession

MI0015803

Description

Arabidopsis lyrata aly-MIR4241 precursor miRNA

Sequence

128 reads, 67.0 reads per million, 4 experiments

gaacgaACUAAACCUCAUUCGAUGUAAGAAAucccaaaaaggacaggguucauaaacauucgcucuauggcccaugauaauguugagucugcuacgugacuuacauuuuugucgggcagaucacgccaauacacaccuggucuCUUUGGGAUUUUCUUACAGCGAaugagguuuaguuccaucuc
((..(((((((((((((((((.((((((((((((((((..((((.((((..............(((...((((((((.(((((.(((((........)))))))))).)))).)))))))..............)))).)))).))))))).))))))))).)))))))))))))))))..))..

Structure

--  ac                 A         -       aa    a    ucauaaacauucgc   aug    -    u     u     ugc 
  ga  gaACUAAACCUCAUUCG UGUAAGAAA ucccaaa  ggac gggu              ucu   gccc auga aaugu gaguc   u
  ||  ||||||||||||||||| ||||||||| |||||||  |||| ||||              |||   |||| |||| ||||| |||||    
  cu  cuugauuuggaguaAGC ACAUUCUUU AGGGUUU  ucug ucca              aga   cggg uguu uuaca uucag   a
cu  ac                 G         U       -C    g    cacauaaccgcacu   ---    c    u     -     ugc 

Annotation confidence Not enough data

Genome context

GL348719.1: 14829014-14829198 [+]

Mature aly-miR4241-5p

• Accession: MIMAT0057405
• Description: Arabidopsis lyrata aly-miR4241-5p mature miRNA
• Sequence: 7 - ACUAAACCUCAUUCGAUGUAAGAAA - 31
• Evidence: experimental ; unknown

Mature aly-miR4241-3p

• Accession: MIMAT0017930
• Description: Arabidopsis lyrata aly-miR4241-3p mature miRNA
• Sequence: 144 - CUUUGGGAUUUUCUUACAGCGA - 165
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103