Stem-loop aly-MIR157a

Accession

MI0014510

Description

Arabidopsis lyrata aly-MIR157a precursor miRNA

Sequence

196 reads, 6834 reads per million, 1 experiments

gaggcauugagagugUUGACAGAAGAUAGAGAGCACagaugauaagauacaauucggagcaguuucuuugcaucuuacuccuuuguGCUCUCUAGCCUUCUGUCAUCAccuuuuauuugcuuu
((((((.((((((((.(((((((((.(((((((((((((.((((((((.(((...((((....))))))).)))))).)).)))))))))))))..))))))))).)).))))))..))))))

Structure

      -u      -  U         -A             u  -      a   uuc    c 
gaggca  ugagag ug UGACAGAAG  UAGAGAGCACaga ga uaagau caa   ggag a
||||||  |||||| || |||||||||  ||||||||||||| || |||||| |||   ||||  
uuucgu  auuuuc AC ACUGUCUUC  AUCUCUCGuguuu cu auucua guu   ucuu g
      uu      c  U         CG             c  c      c   ---    u 

Annotation confidence Low

Genome context

GL348714.1: 11818143-11818265 [-]

Mature aly-miR157a-5p

• Accession: MIMAT0017413
• Description: Arabidopsis lyrata aly-miR157a-5p mature miRNA
• Sequence: 16 - UUGACAGAAGAUAGAGAGCAC - 36
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR157a-3p

• Accession: MIMAT0017414
• Description: Arabidopsis lyrata aly-miR157a-3p mature miRNA
• Sequence: 87 - GCUCUCUAGCCUUCUGUCAUCA - 108
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103