miRBase entry: aly-MIR165a

Stem-loop aly-MIR165a


Accession
MI0014530
Description
Arabidopsis lyrata aly-MIR165a precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

1 reads, 35 reads per million, 1 experiments
aucaugagaauuaagcuauuucaguugagggGAAUGUUGUCUGGAUCGAGGauauuauacauauauacauguguauguugauacaugugaucauagagaguauccUCGGACCAGGCUUCAUCCCCcccaacauguuauugccucugau
((((.(((......((.((..((((((.((((.(((..((((((.(((((((((((.........(((((((((......))))))))).........))))))))))).))))))..))).)))).)))).))..)).)))))))))

Structure
    u   aauuaa  u  uu  -    a    A   UU      A           auacauaua         au 
auca gag      gc au  ca guug gggG AUG  GUCUGG UCGAGGauauu         uacaugugu  g
|||| |||      || ||  || |||| |||| |||  |||||| |||||||||||         |||||||||   
uagu cuc      cg ua  gu caac cCCC UAC  CGGACC GGCUccuauga         guguacaua  u
    -   ------  u  uu  a    c    C   UU      A           gagauacua         gu 


Annotation confidence Not enough data
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Genome context
GL348713.1: 449074-449221 [+]

Database links

Mature aly-miR165a-5p

Accession MIMAT0017455
Description Arabidopsis lyrata aly-miR165a-5p mature miRNA
Sequence 32 - GAAUGUUGUCUGGAUCGAGG - 51
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR165a-3p

Accession MIMAT0017456
Description Arabidopsis lyrata aly-miR165a-3p mature miRNA
Sequence 106 - UCGGACCAGGCUUCAUCCCC - 125
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103