Stem-loop aly-MIR165a

Accession

MI0014530

Description

Arabidopsis lyrata aly-MIR165a precursor miRNA

Sequence

340117 reads, 20455.0 reads per million, 12 experiments

aucaugagaauuaagcuauuucaguugaggGGAAUGUUGUCUGGAUCGAGgauauuauacauauauacauguguauguugauacaugugaucauagagaguauccUCGGACCAGGCUUCAUCCCCCccaacauguuauugccucugau
((((.(((......((.((..((((((.((((.(((..((((((.(((((((((((.........(((((((((......))))))))).........))))))))))).))))))..))).)))).)))).))..)).)))))))))

Structure

    u   aauuaa  u  uu  -    a    A   UU      A           auacauaua         au 
auca gag      gc au  ca guug ggGG AUG  GUCUGG UCGAGgauauu         uacaugugu  g
|||| |||      || ||  || |||| |||| |||  |||||| |||||||||||         |||||||||   
uagu cuc      cg ua  gu caac CCCC UAC  CGGACC GGCUccuauga         guguacaua  u
    -   ------  u  uu  a    c    C   UU      A           gagauacua         gu 

Annotation confidence High

Genome context

GL348713.1: 449074-449221 [+]

Mature aly-miR165a-5p

• Accession: MIMAT0017455
• Description: Arabidopsis lyrata aly-miR165a-5p mature miRNA
• Sequence: 31 - GGAAUGUUGUCUGGAUCGAG - 50
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR165a-3p

• Accession: MIMAT0017456
• Description: Arabidopsis lyrata aly-miR165a-3p mature miRNA
• Sequence: 106 - UCGGACCAGGCUUCAUCCCCC - 126
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103