Stem-loop aly-MIR166h

Accession

MI0026012

Description

Arabidopsis lyrata aly-MIR166h precursor miRNA

Sequence

108 reads, 3766 reads per million, 1 experiments

aaguucaggUGAAUGAUGCCUGGCUCGAGAccauuccaucucaugaucaugaugaugauauaaugaugaugaugaugUCGGACCAGGCUUCAUUCCCCucaacuu
(((((.(((.((((((.((((((.((((.(.(((..((((((((.(((((....)))))...)))).))))))).).)))).)))))).)))))).))).)))))

Structure

     c   U      U      C    G c   uc    -    --g     g 
aaguu agg GAAUGA GCCUGG UCGA A cau  cauc ucau   aucau a
||||| ||| |||||| |||||| |||| | |||  |||| ||||   |||||  
uucaa uCC CUUACU CGGACC GGCU u gua  guag agua   uagua u
     c   C      U      A    g a   --    u    aua     g 

Annotation confidence Not enough data

Genome context

GL349043.1: 5720-5824 [-]

Mature aly-miR166h-5p

• Accession: MIMAT0031382
• Description: Arabidopsis lyrata aly-miR166h-5p mature miRNA
• Sequence: 10 - UGAAUGAUGCCUGGCUCGAGA - 30
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR166h-3p

• Accession: MIMAT0031383
• Description: Arabidopsis lyrata aly-miR166h-3p mature miRNA
• Sequence: 78 - UCGGACCAGGCUUCAUUCCCC - 98
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103