Stem-loop aly-MIR172a

Accession

MI0014563

Description

Arabidopsis lyrata aly-MIR172a precursor miRNA

Sequence

2732 reads, 95258 reads per million, 1 experiments

ggagccacggucgcuguuugcugcuGUGGCAUCAUCAAGAUUCACAucuguugauggacgguggugauucgcucuccccaaaguucucuaugaaaaugAGAAUCUUGAUGAUGCUGCAUcggcaaucaacggcuauucuuuuucucucc
((((....(((((.((.((((((.(((((((((((((((((((.(((.(((.((.((((..(((.((.......)).)))..)))))).)))...))).))))))))))))))))))).)))))).)).)))))...........))))

Structure

    -------ccac     c  u      c                   A   --c   u  u    gg   u  uu 
ggag           ggucg ug uugcug uGUGGCAUCAUCAAGAUUC CAu   ugu ga ggac  ugg ga  c
||||           ||||| || |||||| ||||||||||||||||||| |||   ||| || ||||  ||| ||  g
ccuc           ucggc ac aacggc ACGUCGUAGUAGUUCUAAG gua   gua cu cuug  acc cu  c
    ucuuuuucuua     a  u      U                   A   aaa   u  -    aa   c  cu 

Annotation confidence High

Genome context

GL348716.1: 12144107-12144255 [+]

Mature aly-miR172a-5p

• Accession: MIMAT0017521
• Description: Arabidopsis lyrata aly-miR172a-5p mature miRNA
• Sequence: 26 - GUGGCAUCAUCAAGAUUCACA - 46
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR172a-3p

• Accession: MIMAT0017522
• Description: Arabidopsis lyrata aly-miR172a-3p mature miRNA
• Sequence: 99 - AGAAUCUUGAUGAUGCUGCAU - 119
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103