Stem-loop aly-MIR3446

Accession

MI0014662

Description

Arabidopsis lyrata aly-MIR3446 precursor miRNA

Sequence

19551 reads, 760.0 reads per million, 10 experiments

cuccuaucguccaauaguuuuuuuggaaaggcuucauuuaaacagagagucguuuuauccugggaacucaCUCCAUCGUGAAUACUCGgaagcuagacguguggcagggaaaaugaguuaagggaaaccgugauuaguaugacaucgccaaccggcagcauucacaaagaucuuaAACUCCUUUCCCCUGCCACUCUuuuagcuuccgaaucuuuuucgaugggugaguuccuuggagaaaaaaucuuucucuacggaugaagcguuuacgaagaaacaauugggauggag
((((.(((..(((((.(((((((((..((.(((((((((....((((((...((((.(((.((((((((((.((((((.(((...((((((((((((.(.(((((((((.(((.(((((((((......((((.....(((.(...(((....))).)))))))).....)))).))))).))).))))))))).).))))))))))))....))).)))))))))))))))).))).))))...))))))....))))))))).))..))))))))).))))))))))))

Structure

    u   gu     a         ga  g         aaac      ucg    a   u          U      U   -UAC            c u         a   u     -    gaaacc    uuagu   a auc   a 
cucc auc  ccaau guuuuuuug  aa gcuucauuu    agagag   uuuu ucc gggaacucaC CCAUCG GAA    UCGgaagcuaga g guggcaggg aaa gaguu aagg      guga     aug c   gcc a
|||| |||  ||||| |||||||||  || |||||||||    ||||||   |||| ||| |||||||||| |||||| |||    |||||||||||| | ||||||||| ||| ||||| ||||      ||||     ||| |   |||  
gagg uag  gguua caaagaagc  uu cgaaguagg    ucuuuc   aaaa agg uccuugagug gguagc uuu    agccuucgauuu C CACCGUCCC UUU CUCAA uucu      cacu     uac g   cgg c
    -   --     a         au  g         cauc      uaa    g   u          -      u   ucua            U U         C   C     a    -agaaa    -----   - --a   c 

Annotation confidence Low

Genome context

GL348714.1: 16331891-16332181 [-]

Mature aly-miR3446-5p

• Accession: MIMAT0017727
• Description: Arabidopsis lyrata aly-miR3446-5p mature miRNA
• Sequence: 71 - CUCCAUCGUGAAUACUCG - 88
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3446-3p

• Accession: MIMAT0017728
• Description: Arabidopsis lyrata aly-miR3446-3p mature miRNA
• Sequence: 176 - AACUCCUUUCCCCUGCCACUCU - 197
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103