miRBase entry: ath-MIR4243

Stem-loop ath-MIR4243

Accession

MI0015821

Description

Arabidopsis thaliana ath-MIR4243 precursor miRNA

Sequence

aaagaaccgugaauuacagUUGAAAUUGUAGAUUUCGUACaugacaauaauuugcucgagcaucacuuucaugauuuuguggucuguguugccguauuugagagcauacauuucauguucgaaaucuacgauuuuaacucuaauuuuuggaugguucuuuauuucaauuacagagggau
((((((((((((((((.((((((((((((((((((((.((((((.(((....(((((..(((.(((..((((......))))...))).))).........)))))...))))))))).)))))))))))))))))))).))))))....))))))))))...................

Structure

-------------------          ----      c                    U      c   aauu     -------ga   u   -uu    ga 
                   aaagaaccgu    gaauua agUUGAAAUUGUAGAUUUCG ACauga aau    ugcuc         gca cac   ucau  u
                   ||||||||||    |||||| |||||||||||||||||||| |||||| |||    |||||         ||| |||   ||||   
                   uuucuuggua    uuuaau ucaauuuuagcaucuaaagc uguacu uua    acgag         cgu gug   ggug  u
uagggagacauuaacuuua          gguu      c                    u      -   -cau     aguuuaugc   u   ucu    uu

Annotation confidence Not enough data

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Genome context

chr5: 19567208-19567386 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR4243

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ath-miR4243

Accession	MIMAT0017949
Description	Arabidopsis thaliana ath-miR4243 mature miRNA
Sequence	20 - UUGAAAUUGUAGAUUUCGUAC - 40
Evidence	experimental SOLiD [1]

References

PubMed ID: 20407023
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
"Ma Z, Coruh C, Axtell MJ"
"Plant Cell (2010) 22:1090-1103