Stem-loop aly-MIR2112

Accession

MI0014632

Description

Arabidopsis lyrata aly-MIR2112 precursor miRNA

Sequence

augaugCGCAAAUGCGGAUAUCAAUGUaaaucaggacaacaaaccaauagaggugcucagcaaaaacaacaaaaugcgaaaaggguuuaucagaaacauuauuugaaacauuggggucaugauauacCUUUAUAUCCGCAUUUGCGCAucau
(((((((((((((((((((((.((.(((.((((.(((..((((((......)))((...))..........((((.(.....).)))).(((((.......)))))....)))..))).)))).))).)).)))))))))))))))))))))

Structure

                     C  U   a    g   aa   accaauagaggugcucagcaaaaacaaca    g g 
augaugCGCAAAUGCGGAUAU AA GUa auca gac  caa                             aaau c a
||||||||||||||||||||| || ||| |||| |||  |||                             |||| | a
uacuACGCGUUUACGCCUAUA UU cau uagu cug  guu                             uuug g a
                     U  C   a    a   gg   -------acaaaguuuauuacaaagacua    g a 

Annotation confidence Not enough data

Genome context

GL348713.1: 240436-240587 [+]

Mature aly-miR2112-5p

• Accession: MIMAT0017661
• Description: Arabidopsis lyrata aly-miR2112-5p mature miRNA
• Sequence: 7 - CGCAAAUGCGGAUAUCAAUGU - 27
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR2112-3p

• Accession: MIMAT0017662
• Description: Arabidopsis lyrata aly-miR2112-3p mature miRNA
• Sequence: 128 - CUUUAUAUCCGCAUUUGCGCA - 148
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103