Stem-loop aly-MIR4231

Accession

MI0015792

Description

Arabidopsis lyrata aly-MIR4231 precursor miRNA

Sequence

6 reads, 209 reads per million, 1 experiments

aaucaggucauaaaggcaguUAGACCUUUGUGUUGCCAUCGuucuuggcgcucgcuucaccaaaagcgccaagaccgauggcaacaaggagguuuaaccgccuucugagcugauuuuu
((((((.(((..(((((.(((((((((((.(((((((((((.((((((((((............)))))))))).))))))))))).))))))))))).))))).))).))))))...

Structure

---      g   ua     a           G           u          cgcuu 
   aaucag uca  aaggc guUAGACCUUU UGUUGCCAUCG ucuuggcgcu     c
   |||||| |||  ||||| ||||||||||| ||||||||||| ||||||||||      
   uuaguc agu  uuccg caauuuggagg acaacgguagc agaaccgcga     a
uuu      g   -c     c           a           c          aaacc 

Annotation confidence Not enough data

Genome context

GL348715.1: 22209462-22209579 [+]

Mature aly-miR4231

• Accession: MIMAT0017919
• Description: Arabidopsis lyrata aly-miR4231 mature miRNA
• Sequence: 21 - UAGACCUUUGUGUUGCCAUCG - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103