miRBase entry: aly-MIR4231

Stem-loop aly-MIR4231


Accession
MI0015792
Description
Arabidopsis lyrata aly-MIR4231 precursor miRNA


Sequence

1828 reads, 247.0 reads per million, 11 experiments
aaucaggucauaaaggcagUUAGACCUUUGUGUUGCCAUCguucuuggcgcucgcuucaccaaaagcgccaagaccgauggcaacaaggagguuuaaccgccuucugagcugauuuuu
((((((.(((..(((((.(((((((((((.(((((((((((.((((((((((............)))))))))).))))))))))).))))))))))).))))).))).))))))...

Structure
---      g   ua     a           G           u          cgcuu 
   aaucag uca  aaggc gUUAGACCUUU UGUUGCCAUCg ucuuggcgcu     c
   |||||| |||  ||||| ||||||||||| ||||||||||| ||||||||||      
   uuaguc agu  uuccg caauuuggagg acaacgguagc agaaccgcga     a
uuu      g   -c     c           a           c          aaacc 


Annotation confidence Not enough data
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Genome context
GL348715.1: 22209462-22209579 [+]

Database links

Mature aly-miR4231-5p

Accession MIMAT0017919
Description Arabidopsis lyrata aly-miR4231-5p mature miRNA
Sequence 20 - UUAGACCUUUGUGUUGCCAUC - 40
Evidence experimental
SOLiD [1]

Mature aly-miR4243-5p

Accession MIMAT0017932
Description Arabidopsis lyrata aly-miR4243-5p mature miRNA
Sequence 20 - UUAGACCUUUGUGUUGCCAUC - 40
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103