Stem-loop aly-MIR399h

Accession

MI0014637

Description

Arabidopsis lyrata aly-MIR399h precursor miRNA

Sequence

auuacaGGGCAAGAUCUCUAUUGGCAGGaaaccauuacuugaccuuugcaucucuuuaugcauugcuuuguagugaguucuUGCCAAAGGAGAUUUGCCCGGuaau
(((((.(((((.(((((((.((((((((((..((((((..((.(..(((((......)))))..).)).))))))..)))))))))).)))))))))))).)))))

Structure

     a     A       A          ac      uu  c uu     cu 
auuac GGGCA GAUCUCU UUGGCAGGaa  cauuac  ga c  ugcau  c
||||| ||||| ||||||| ||||||||||  ||||||  || |  |||||   
uaauG CCCGU UUAGAGG AACCGUucuu  gugaug  uu g  acgua  u
     G     -       A          ga      -u  c uu     uu 

Annotation confidence Not enough data

Genome context

GL348713.1: 12884715-12884820 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR399h

Mature aly-miR399h-5p

• Accession: MIMAT0017671
• Description: Arabidopsis lyrata aly-miR399h-5p mature miRNA
• Sequence: 7 - GGGCAAGAUCUCUAUUGGCAGG - 28
• Evidence: experimental ; Illumina [1]

Mature aly-miR399h-3p

• Accession: MIMAT0017672
• Description: Arabidopsis lyrata aly-miR399h-3p mature miRNA
• Sequence: 82 - UGCCAAAGGAGAUUUGCCCGG - 102
• Evidence: experimental ; Illumina [1], Solid [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103