Stem-loop aly-MIR4248a

Accession

MI0015810

Description

Arabidopsis lyrata aly-MIR4248a precursor miRNA

Sequence

1631 reads, 157.0 reads per million, 11 experiments

uguggugauauucaaaauauacauuUUAUUUUUGGCAAUCAUUUUUCUUuuauaaauucaaaagucauuuuucuuucuaaaaacacaauaauauauauauauaaccaacguuugaguuuuaaaaaagaaaaaugaauuuauaagaaaaugauugccaaaaagaaaauguauauuuuguuauauuacaaaaa
....(((((((.(((((((((((((((.((((((((((((((((((...((((((((.......((((((((((((...(((((.(((.......................))).)))))...)))))))))))))))))))))))))))))))))))))).)))))))))))))))..))))))).....

Structure

-ugug       -u               A                  CUU        ucaaaag            cua     a   uaauauauau 
     gugauau  caaaauauacauuUU UUUUUGGCAAUCAUUUUU   uuauaaau       ucauuuuucuuu   aaaac caa          a
     |||||||  ||||||||||||||| ||||||||||||||||||   ||||||||       ||||||||||||   ||||| |||          u
     cauuaua  guuuuauauguaaaa aaaaaccguuaguaaaag   aauauuua       aguaaaaagaaa   uuuug guu          a
aaaaa       uu               g                  ---        -------            aaa     a   ugcaaccaau 

Annotation confidence Not enough data

Genome context

GL348713.1: 5411335-5411525 [-]

Mature aly-miR4248a-5p

• Accession: MIMAT0017937
• Description: Arabidopsis lyrata aly-miR4248a-5p mature miRNA
• Sequence: 26 - UUAUUUUUGGCAAUCAUUUUUCUU - 49
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103