Stem-loop aly-MIR395g

Accession

MI0014634

Description

Arabidopsis lyrata aly-MIR395g precursor miRNA

Sequence

gucggauguucccuagaGUUCCUCUGAGCACUUCAUUGgagauaccauugucuaugaaauaguauucuaCUGAAGUGUUUGGGGGAACUCcuggacucauucgau
((((((((...((..((((((((((((((((((((.(((((.(((.(((........))).)))))))).))))))))))))))))))))..))...))))))))

Structure

        uuc  ua                    U     a   c   guc 
gucggaug   cc  gaGUUCCUCUGAGCACUUCA UGgag uac auu   u
||||||||   ||  |||||||||||||||||||| ||||| ||| |||    
uagcuuac   gg  CUCAAGGGGGUUUGUGAAGU aucuu aug uaa   a
        uca  uc                    C     -   a   agu 

Annotation confidence Not enough data

Genome context

GL348714.1: 14005416-14005520 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aly-MIR395g

Mature aly-miR395g-5p

• Accession: MIMAT0017665
• Description: Arabidopsis lyrata aly-miR395g-5p mature miRNA
• Sequence: 18 - GUUCCUCUGAGCACUUCAUUG - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR395g-3p

• Accession: MIMAT0017666
• Description: Arabidopsis lyrata aly-miR395g-3p mature miRNA
• Sequence: 70 - CUGAAGUGUUUGGGGGAACUC - 90
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103