miRBase entry: aly-MIR4236

Stem-loop aly-MIR4236


Accession
MI0015798
Description
Arabidopsis lyrata aly-MIR4236 precursor miRNA


Sequence

1 reads, 35 reads per million, 1 experiments
auaaaaucgcaaaucuguuaggagggaaacaaauuaaugucuuauaggacgcaagggcaccaauacucuuaagcuauuguggugacugcuauccaaggucuuauaaggCAUUAAUUUGUUCCCCUCCUAaugcauguggaauucuaauc
.......((((....(((((((((((.((((((((((((((((((((((((((.(..((((((((((....)).)))..))))).))))........))))))))))))))))))))))).)))))))))))..))))...........

Structure
----auaaaau    aauc           a                       --------   a gg     --   -  c 
           cgca    uguuaggaggg aacaaauuaaugucuuauaggac        gca g  cacca  aua cu u
           ||||    ||||||||||| |||||||||||||||||||||||        ||| |  |||||  ||| ||  
           gugu    guaAUCCUCCC UUGUUUAAUUACggaauauucug        cgu c  guggu  uau ga u
cuaaucuuaag    --ac           C                       gaaccuau   - -a     gu   c  a 


Annotation confidence Not enough data
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Genome context
GL348718.1: 6972054-6972202 [-]

Database links

Mature aly-miR4236

Accession MIMAT0017925
Description Arabidopsis lyrata aly-miR4236 mature miRNA
Sequence 109 - CAUUAAUUUGUUCCCCUCCUA - 129
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103