Stem-loop aly-MIR169a

Accession

MI0014545

Description

Arabidopsis lyrata aly-MIR169a precursor miRNA

Sequence

2973 reads, 225.0 reads per million, 11 experiments

aacgcguaugugacgaaaguagugugCAGCCAAGGAUGACUUGCCGauuuaaaugaucuuucuuuauacucuauuaagacauuuuaaguuucaaauuucuuugguucuucaaggauuaaggaagaaaguaggcuauauauguagauauauauauuaugcuguauuaaauauauguacaagauaagaccaaaaaagaaaaaguaacaaucaugaucgGCAAGUUGUCCUUGGCUACACguuacuuugugucgcgcauagguguu
(((((.((((((.(((((((((((((.((((((((((((((((((((((...(((((.(((((((....(((....))).......(.((((....((((((((((((...)))))))))))))))).).((((.(((.((((.((((((((((......))))...)))))).))))..))))).))...)))))))........))))))))))))))))))))))))))).))))))))))....))))))))).)))))

Structure

     g      a   ----          C                      uaa     -------c       auacucuauuaagacauuuuaaguuucaaauuucuuugguucuucaaggauuaaggaagaaagua  -  a   -a    g      ---    ua 
aacgc uaugug cga    aaguagugug AGCCAAGGAUGACUUGCCGauu   augau        uuucuuu                                                                 gg cu uau  ugua auauau   auau  u
||||| |||||| |||    |||||||||| ||||||||||||||||||||||   |||||        |||||||                                                                 || || |||  |||| ||||||   ||||   
uugug auacgc gcu    uucauugCAC UCGGUUCCUGUUGAACGgcuag   uacua        aaagaaa                                                                 cc ga aua  acau uauaua   uaug  g
     g      -   gugu          A                      ---     acaaugaa       --------------------------------------------------------------aaa  a  -   ga    g      aau    uc 

Annotation confidence Medium

Genome context

GL348715.1: 5439432-5439694 [-]

Mature aly-miR169a-5p

• Accession: MIMAT0017485
• Description: Arabidopsis lyrata aly-miR169a-5p mature miRNA
• Sequence: 27 - CAGCCAAGGAUGACUUGCCG - 46
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169a-3p

• Accession: MIMAT0017486
• Description: Arabidopsis lyrata aly-miR169a-3p mature miRNA
• Sequence: 217 - GCAAGUUGUCCUUGGCUACAC - 237
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103