miRBase entry: aly-MIR4235

Stem-loop aly-MIR4235


Accession
MI0015797
Description
Arabidopsis lyrata aly-MIR4235 precursor miRNA


Sequence

1 reads, 35 reads per million, 1 experiments
cuguaguaugugugauuucuggguuguauuguuuucaguuccuguucuguaagugaauaugaccaauacuuguugguuacacucaagcuguacagaacaggaACUGAAAACACUACAACCCCUagaucuugguacuuuuuacu
....(((((....(((((..((((((((.(((((((((((((((((((((((((((...((((((((....))))))))...))..))).)))))))))))))))))))))).))))))))..)))))...))))).......

Structure
---cugu     gugu     cu        u                      -   --  aua        a 
       aguau    gauuu  ggguugua uguuuucaguuccuguucugua agu  ga   ugaccaau c
       |||||    |||||  |||||||| |||||||||||||||||||||| |||  ||   ||||||||  
       ucaug    cuaga  CCCAACAU ACAAAAGUCAaggacaagacau ucg  cu   auugguug u
ucauuuu     -guu     UC        C                      g   aa  cac        u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348717.1: 17278055-17278197 [+]

Database links

Mature aly-miR4235

Accession MIMAT0017924
Description Arabidopsis lyrata aly-miR4235 mature miRNA
Sequence 103 - ACUGAAAACACUACAACCCCU - 123
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103