Accession
MI0014614
Description
Arabidopsis lyrata
aly-MIR840 precursor miRNA MIR840
Gene
family?
family?
RF03672;
MIR840
Sequence
48
reads,
1674
reads per million, 1 experiments
gauucggggcucguaaagcaggugauucaccaauucagguuuacauccgcaguguggaagACACUAAAGGACCUAAACUAACaaagagaaacagcucauugugcgggguauuacacucuuaaugucugaaugcgauaauccgcacgaugaucucuuuaucuuuguUUGUUUAGGUCCCUUAGUUUCUucuauaccgcgaaugaaauccuauguuggacgaaucaacuugguuuacgauuuccaaauc
((((.((((.(((((((.((((((((((.(((((..(((.((.(((.(((.((((((((((.(((((.((((((((((.((((((((.(((.((.((((((((((((.((((.((.((.........)).)).)))).)))))))))))).)).))).)))))))).)))))))))).))))).)))))))))).))).))).)).)))..)))))..))))).))))).))))))).)))).))))
((((.((((.(((((((.((((((((((.(((((..(((.((.(((.(((.((((((((((.(((((.((((((((((.((((((((.(((.((.((((((((((((.((((.((.((.........)).)).)))).)))))))))))).)).))).)))))))).)))))))))).))))).)))))))))).))).))).)).)))..)))))..))))).))))).))))))).)))).))))
Structure
c c g - -a uc u a c a C A U g c c g a c uua
gauu gggg ucguaaa caggu gauuc ccaau agg uu cau cgc guguggaagA ACUAA GGACCUAAAC AACaaaga aaa ag ucauugugcggg uauu ca uc a
|||| |||| ||||||| ||||| ||||| ||||| ||| || ||| ||| |||||||||| ||||| |||||||||| |||||||| ||| || |||||||||||| |||| || || u
cuaa ccuu agcauuu guuca cuaag gguug ucc aa gua gcg cauaucuUCU UGAUU CCUGGAUUUG Uuguuucu uuu uc aguagcacgccu auag gu ag g
a u g a ca ua u a a c U C U a c u a c a ucu
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
GL348717.1: 995511-995757 [-]
Database links
Mature aly-miR840-5p
| Accession | MIMAT0017625 |
| Description | Arabidopsis lyrata aly-miR840-5p mature miRNA |
| Sequence | 61 - ACACUAAAGGACCUAAACUAAC - 82 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
Mature aly-miR840-3p
| Accession | MIMAT0017626 |
| Description | Arabidopsis lyrata aly-miR840-3p mature miRNA |
| Sequence | 166 - UUGUUUAGGUCCCUUAGUUUCU - 187 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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