Accession
MI0015805
Description
Arabidopsis lyrata
aly-MIR4243 precursor miRNA
Sequence
362
reads,
58.0
reads per million, 9 experiments
uuaagaaccaugauuacaguugaAAUUAUAGAUUUCGUACAUGAcaacaauuugcucuagucucacucucaagauuuugugguuguuguugcaguauucgagagaauacaugucaaauaugagagcaugcaugucauguacgaaaucuacaauuuaaacucuaauuaauggaugguucu
...(((((((((((((.((((.(((((.((((((((((((((((((......((((((....((((............)))).((((...(((((((((....)))))).)))..))))..))))))....)))))))))))))))))).))))).)))).))))).....))))))))
...(((((((((((((.((((.(((((.((((((((((((((((((......((((((....((((............)))).((((...(((((((((....)))))).)))..))))..))))))....)))))))))))))))))).))))).)))).))))).....))))))))
Structure
uua ----- c g A acaauu agucucacucucaagauuuuguggu guu - g agaaccau gauua aguu aAAUU UAGAUUUCGUACAUGAca ugcucu uguu gca guauuc a |||||||| ||||| |||| ||||| |||||||||||||||||| |||||| |||| ||| |||||| ucuuggua uuaau ucaa uuuaa aucuaaagcauguacugu acgaga auaa ugu cauaag g --- gguaa c a c --acgu -----------------------gu -ac a a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348720.1: 11472000-11472178 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR4243
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR4243-5p
| Accession | MIMAT0017932 |
| Description | Arabidopsis lyrata aly-miR4243-5p mature miRNA |
| Sequence | 24 - AAUUAUAGAUUUCGUACAUGA - 44 |
| Evidence |
experimental
SOLiD [1] |
Mature aly-miR4248a-5p
| Accession | MIMAT0017937 |
| Description | Arabidopsis lyrata aly-miR4248a-5p mature miRNA |
| Sequence | 24 - AAUUAUAGAUUUCGUACAUGA - 44 |
| Evidence |
experimental
SOLiD [1] |
References
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