Stem-loop aly-MIR4243

Accession

MI0015805

Description

Arabidopsis lyrata aly-MIR4243 precursor miRNA

Sequence

uuaagaaccaugauuacaguUGAAAUUAUAGAUUUCGUACAugacaacaauuugcucuagucucacucucaagauuuugugguuguuguugcaguauucgagagaauacaugucaaauaugagagcaugcaugucauguacgaaaucuacaauuuaaacucuaauuaauggaugguucu
...(((((((((((((.((((.(((((.((((((((((((((((((......((((((....((((............)))).((((...(((((((((....)))))).)))..))))..))))))....)))))))))))))))))).))))).)))).))))).....))))))))

Structure

uua        -----     c    G     A                  acaauu      agucucacucucaagauuuuguggu    guu   -      g 
   agaaccau     gauua aguU AAAUU UAGAUUUCGUACAugaca      ugcucu                         uguu   gca guauuc a
   ||||||||     ||||| |||| ||||| ||||||||||||||||||      ||||||                         ||||   ||| ||||||  
   ucuuggua     uuaau ucaa uuuaa aucuaaagcauguacugu      acgaga                         auaa   ugu cauaag g
---        gguaa     c    a     c                  --acgu      -----------------------gu    -ac   a      a 

Annotation confidence Not enough data

Genome context

GL348720.1: 11472000-11472178 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR4243

Mature aly-miR4243

• Accession: MIMAT0017932
• Description: Arabidopsis lyrata aly-miR4243 mature miRNA
• Sequence: 21 - UGAAAUUAUAGAUUUCGUACA - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103