miRBase entry: aly-MIR3444b

Stem-loop aly-MIR3444b


Accession
MI0015793
Description
Arabidopsis lyrata aly-MIR3444b precursor miRNA
Gene family
MIPF0001177; MIR3444


Sequence

2 reads, 35 reads per million, 1 experiments
uugaauccaaauuccaaacuauugggagauugaugagaucgaccgacaccaaaucaagaucaaugaagauuacgauuccguuucggucAUCUCAUCAAUCUCCCAAUACgaaccuaaaccgaaauuuuc
...................((((((((((((((((((((.((((((.((..((((..((((......))))..))))..)).)))))))))))))))))))))))))).....................

Structure
--uugaauccaaauuccaaac                    c      c  ca    aa    aa 
                     uauugggagauugaugagau gaccga ac  aauc  gauc  u
                     |||||||||||||||||||| |||||| ||  ||||  ||||   
                     AUAACCCUCUAACUACUCUA cuggcu ug  uuag  uuag  g
cuuuuaaagccaaauccaagC                    -      u  cc    ca    aa 


Annotation confidence Not enough data
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Genome context
GL348716.1: 2558111-2558239 [-]

Database links

Mature aly-miR3444b

Accession MIMAT0017920
Description Arabidopsis lyrata aly-miR3444b mature miRNA
Sequence 89 - AUCUCAUCAAUCUCCCAAUAC - 109
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103