Stem-loop aly-MIR4239

Accession

MI0015801

Description

Arabidopsis lyrata aly-MIR4239 precursor miRNA

Gene family

MIPF0001164; MIR4239

Sequence

ucuuguuugcacacuuuguuUCCGUUAUUUCCGCAUGCUCCuuagaaauuuuugugcaucgauauaaaauccuuucauaggagcauacgcaaacaauggaaacaaggaaugcaaauaaaacu
..(((((((((..(((((((((((((.(((.((.((((((((..((((.(((((((......)))))))...))))..)))))))).)).))).)))))))))))))..)))))))))....

Structure

--uc         ca             A   C  C        ua    --u       ca 
    uuguuugca  cuuuguuUCCGUU UUU CG AUGCUCCu  gaaa   uuuugug  u
    |||||||||  ||||||||||||| ||| || ||||||||  ||||   |||||||   
    aauaaacgu  ggaacaaagguaa aaa gc uacgagga  cuuu   aaaauau  c
ucaa         aa             c   c  a        ua    ccu       ag 

Annotation confidence Not enough data

Genome context

GL348719.1: 9366490-9366611 [-]

Mature aly-miR4239

• Accession: MIMAT0017928
• Description: Arabidopsis lyrata aly-miR4239 mature miRNA
• Sequence: 21 - UCCGUUAUUUCCGCAUGCUCC - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103