miRBase entry: ath-MIR4221

Stem-loop ath-MIR4221


Accession
MI0015815
Description
Arabidopsis thaliana ath-MIR4221 precursor miRNA
Gene family
MIPF0001128; MIR4221


Sequence

uaguauauccguuucacaguUUUUCCUCUGUUGAAUUCUUGCacuagcuuucauaugggccauauuaaguuacaugugggugggugccguaacagugcagcaaccauucugcuagcuugugcaagaguuuaaaaguggugaaacuuu
.................((((((.((.((.((((((((((((((.((((..((.((((.((((((........))))))...(.((((......).))).)..))))..))..)))).)))))))))))))).)).)).))))))..

Structure
uaguauauccguuucac      U  U  G              u    uu  -u    -----------------------g      uaa 
                 aguUUU CC CU UUGAAUUCUUGCac agcu  ca  augg                        ccauau   g
                 |||||| || || |||||||||||||| ||||  ||  ||||                        ||||||    
                 ucaaag gg ga aauuugagaacgug ucga  gu  uacc                        ggugua   u
---------------uu      u  u  a              u    uc  cu    aacgacgugacaaugccgugggug      cau 


Annotation confidence Not enough data
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Genome context
chr4: 8460516-8460662 [+]

Database links

Mature ath-miR4221

Accession MIMAT0017942
Description Arabidopsis thaliana ath-miR4221 mature miRNA
Sequence 21 - UUUUCCUCUGUUGAAUUCUUGC - 42
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103